PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G191300.1.p
Common NameLOC101761227, SETIT_008325mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 464aa    MW: 49925 Da    PI: 6.1407
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G191300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15128187155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Seita.4G191300.1.p 128 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 187
                         57*******************666664477446*************************98 PP

2AP247.44.6e-15230281155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Seita.4G191300.1.p 230 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 281
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-17128197IPR016177DNA-binding domain
CDDcd000186.64E-21128197No hitNo description
PfamPF008472.5E-12128187IPR001471AP2/ERF domain
PROSITE profilePS5103219.23129195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-16129196IPR001471AP2/ERF domain
SMARTSM003804.6E-30129201IPR001471AP2/ERF domain
PRINTSPR003671.8E-6130141IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18230291IPR016177DNA-binding domain
CDDcd000183.10E-23230291No hitNo description
PfamPF008475.8E-10230281IPR001471AP2/ERF domain
PROSITE profilePS5103219.045231289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18231290IPR001471AP2/ERF domain
SMARTSM003801.5E-33231295IPR001471AP2/ERF domain
PRINTSPR003671.8E-6271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPPL GEEGAVEESP KIEDFLGGGG  60
GMGAPPATAA EDQLVCGELG SIAAGFLRQY PTPGAVENPG AVTVAMSTEV AESDQARRPV  120
ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL  180
AALKYWGPTT TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ  240
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILN  300
SDLPIGGGAA GRASKFPLDS LPPASAAAMI TGAVSQAMPP SEKDYWSLLA LHYQQQQQQF  360
PASAYEAYGS SGVNVDFTMG TSSHSGSNTS SGVMWGATVG AMGQQDSSSN KQGNTYGSNI  420
PYAAAAMVSG SAGYEGSTGN NGTWVTSNTS AAPQYYNYLF GME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y2A30.0K3Y2A3_SETIT; Uncharacterized protein
STRINGSi008325m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-126AINTEGUMENTA-like 5